PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G154400.1
Common NameB456_012G154400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 198aa    MW: 22036.8 Da    PI: 5.5184
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G154400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.85.3e-09442537
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        +C+ ++++e++lfC  ++  lCe C ++ H+       H
  Gorai.012G154400.1  4 YCDVCSKEEATLFCYADEAVLCEACDVSVHHAnklatkH 42
                        7****************************7443555555 PP

2zf-B_box20.21.2e-065698338
            zf-B_box  3 erkCpeHeeke.lqlfCedCqqllCedClleeHkg......Ht 38
                         + C+ +++++   +fC++++  lC +C l++H+       H+
  Gorai.012G154400.1 56 SPLCDICHQERrGFIFCKEDRAVLCMKCDLSIHRAneytqkHN 98
                        578*****9774778******************7666666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.96147IPR000315B-box-type zinc finger
CDDcd000217.06E-8347No hitNo description
SMARTSM003361.5E-8447IPR000315B-box-type zinc finger
PfamPF006431.0E-6443IPR000315B-box-type zinc finger
SMARTSM003364.2E-1354102IPR000315B-box-type zinc finger
PROSITE profilePS501199.05854102IPR000315B-box-type zinc finger
CDDcd000212.29E-657102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MRIYCDVCSK EEATLFCYAD EAVLCEACDV SVHHANKLAT KHCRFPLLNP NSCNASPLCD  60
ICHQERRGFI FCKEDRAVLC MKCDLSIHRA NEYTQKHNRF LLTGVKLSSL NPISYCPNGV  120
DDESKSLQCS ASNNEILSSA SIEKPLGVED NYSNSDNTSV STTNNMSEYF METIPGWLLD  180
DFLHPSSHAN AFSYGKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457995.11e-143PREDICTED: B-box zinc finger protein 20-like isoform X2
RefseqXP_012457994.11e-143PREDICTED: B-box zinc finger protein 21-like isoform X1
RefseqXP_012457993.11e-143PREDICTED: B-box zinc finger protein 21-like isoform X1
SwissprotQ9LQZ75e-55BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A0D2V6Y71e-146A0A0D2V6Y7_G
STRINGPOPTR_0004s16810.12e-58(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.13e-52salt tolerance homolog2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]